Just as an FYI... The only solution I have found, is to put the clip to be stabilized in a new sequence, run the warp, export the clip (match settings), import the new clip, right click on the original in the original sequence, replace clip with... and Bob's your aunty (you haven't met my uncle Bob).
Tedious and not entirely satisfactory but a crud load better than a few hundred clicks every time you open a project. Don't forget to delete/turn off the Warp from the stabilized sequence once you have rendered the "new" clip.